Bioconductor Differential exon usage

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2.8k

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edger normalization differential exon usage splicing

updated 4.1 years ago by Yunshun Chen ▴ 900 • written 4.1 years ago by oakhamwolf • 0

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1.6k

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DEXSeq differential exon usage

updated 6.5 years ago by Alejandro Reyes ★ 1.9k • written 6.5 years ago by A ▴ 40

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1.6k

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differential exon usage exon array analysis annotation hta2.0 diffsplice

updated 7.2 years ago by James W. MacDonald 67k • written 7.2 years ago by relathman ▴ 20

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egdeR multiple time points model.matrix differential exon usage model

7.3 years ago heikki.sarin ▴ 10

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1.8k

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dexseq differential exon usage

updated 7.8 years ago by mat.lesche ▴ 110 • written 7.8 years ago by Assa Yeroslaviz ★ 1.5k

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3.3k

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dexseq differential exon usage

7.8 years ago fizer ▴ 40

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3.6k

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deseq2 dexseq rnaseq differential gene expression differential exon usage

updated 7.9 years ago by Michael Love 43k • written 7.9 years ago by fizer ▴ 40

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898

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dexseq deseq2 differential exon usage

8.1 years ago ste.depo ▴ 10

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1.9k

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dexseq rsem differential exon usage differential gene expression

updated 8.4 years ago by James W. MacDonald 67k • written 8.4 years ago by Assa Yeroslaviz ★ 1.5k

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1.4k

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DEXSeq timecourse rna-seq differential exon usage

updated 8.8 years ago by Alejandro Reyes ★ 1.9k • written 8.8 years ago by MedwayC • 0

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1.7k

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DEXSeq differential exon usage exon usage

updated 9.0 years ago by Alejandro Reyes ★ 1.9k • written 9.0 years ago by biominer ▴ 10

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dexseq rnaseq differential exon usage

9.3 years ago arom2 • 0

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3.6k

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dexseq bitseq cuffdiff Differential exon usage isoforms

9.5 years ago • updated 9.4 years ago elle ▴ 10

13 results • Page 1 of 1

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Comment: ANOVA like approach of edgeR by Gordon Smyth 52k

To identify common upregulated or downregulated genes, you would need to test for media condition contrasts for each cell type separately, …

Comment: DESeq2 sizefactors counfounded with biological treatment by Anna • 0

Hi James, Apologies (re: posting in the wrong place). Thank you so much for your response, that was exactly the help I needed. Best, A…

Comment: ANOVA like approach of edgeR by Talip ▴ 10

I am comparing the expression patterns of different tissue cell lines (CellType) under five distinct media conditions (Status). Since the c…

Comment: Merge Replicates vs Mixed Model by gabriel.hoffman ▴ 160

It is almost always better to retain the full observed data, if the statistical software is able to model the repeated measures. This is a…

Comment: makeContrastsDream for Interaction by gabriel.hoffman ▴ 160

The simplest way to handle contrasts with an interaction term is to create a new variable. Lets consider a simpler case with variables `Se…

Votes

Answer: Limma- Print-tip loess normalisation-printer layout information does not match M

Comment: Limma- Print-tip loess normalisation-printer layout information does not match M

Answer: ANOVA like approach of edgeR

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Teacher to Gordon Smyth 52k

Popular Question to Hans-Ulrich Klein ▴ 330